PlanktonLab - Publications

2022

Cheung, S., Liu, K., Turk‐Kubo, K. A., Nishioka, J., Suzuki, K., Landry, M. R., Zehr, J. P., Leung, S., Deng, L., & Liu, H. (2022). High biomass turnover rates of endosymbiotic nitrogen‐fixing cyanobacteria in the western Bering Sea. Limnology and Oceanography Letters, lol2.10267. https://doi.org/10.1002/lol2.10267

Guo, C., Ke, Y., Chen, B., Zhang, S., & Liu, H. (2022). Making comparable measurements of bacterial respiration and production in the subtropical coastal waters. Marine Life Science & Technology, 4(3), 414–427. https://doi.org/10.1007/s42995-022-00133-2

Wu, W., & Liu, H. (2022). Cell size is a key ecological trait associated with biogeographic patterns of microbial eukaryotes in coastal waters. Frontiers in Marine Science, 9, 933256. https://doi.org/10.3389/fmars.2022.933256

Zhang Shuwen, Liu Hongbin, & Xia Xiaomin. (2022). Community Dynamics of Free-Living and Particle-Attached Bacteria over Sequential Blooms of Heterotrophic Dinoflagellate Noctiluca scintillans and Mixotrophic Ciliate Mesodinium rubrum. Applied and Environmental Microbiology, 88(22), e01323-22. https://doi.org/10.1128/aem.01323-22

Zou, D., Li, H., Du, P., Wang, B., Lin, H., Liu, H., Chen, J., & Li, M. (2022). Distinct Features of Sedimentary Archaeal Communities in Hypoxia and Non-Hypoxia Regions off the Changjiang River Estuary. Microbiology Spectrum, 10(5), e01947-22. https://doi.org/10.1128/spectrum.01947-22

Guo, C., Ke, Y., Chen, B., Zhang, S., & Liu, H. (2022). Making comparable measurements of bacterial respiration and production in the subtropical coastal waters. Marine Life Science & Technology, 4(3), 414–427. https://doi.org/10.1007/s42995-022-00133-2

Liu, K., Ng, H. Y.-T., Gao, Z., & Liu, H. (2022). Selective Feeding of a Mixotrophic Dinoflagellate (Lepidodinium sp.) in Response to Experimental Warming and Inorganic Nutrient Imbalance. Frontiers in Microbiology, 13, 805306. https://doi.org/10.3389/fmicb.2022.805306

Zhang, X., Cheung, S., Wang, J., Zhang, G., Wei, Y., Liu, H., Sun, J., & Liu, H. (2022). Highly Diverse Synechococcus Pigment Types in the Eastern Indian Ocean. Frontiers in Microbiology, 13, 806390. https://doi.org/10.3389/fmicb.2022.806390

2021

Li, Y., Liu, H., & Wang, W.-X. (2021). Gut-microbial adaptation and transformation of silver nanoparticles mediated the detoxification of Daphnia magna and offsprings. Environmental Science: Nano, 10.1039.D1EN00765C. https://doi.org/10.1039/D1EN00765C

Chen, J., Li, Y., Jing, H., Zhang, X., Xu, Z., Xu, J., & Liu, H. (2021). Genomic and transcriptomic evidence for the diverse adaptations of subclusters 5.2 and 5.3 Synechococcus to mesoscale eddies. New Phytologist, nph.17903. https://doi.org/10.1111/nph.17903

Cheung, S., Zehr, J. P., Xia, X., Tsurumoto, C., Endo, H., Nakaoka, S., Mak, W., Suzuki, K., & Liu, H. (2021). Gamma4: A genetically versatile Gammaproteobacterial NIFH phylotype that is widely distributed in the North Pacific Ocean. Environmental Microbiology, 23(8), 4246–4259. https://doi.org/10.1111/1462-2920.15604

Cheung, Y. Y., Cheung, S., Mak, J., Liu, K., Xia, X., Zhang, X., Yung, Y., & Liu, H. (2021). Distinct interaction effects of warming and anthropogenic input on diatoms and dinoflagellates in an urbanized estuarine ecosystem. Global Change Biology, 27(15), 3463–3473. https://doi.org/10.1111/gcb.15667

Deng, L., Cheung, S., Kang, C., Liu, K., Xia, X., & Liu, H. (2021). Elevated temperature relieves phosphorus limitation of marine unicellular diazotrophic cyanobacteria. Limnology and Oceanography, lno.11980. https://doi.org/10.1002/lno.11980

Li, Y., Xu, Z., & Liu, H. (2021). Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota. BMC Genomics, 22(1), 37. https://doi.org/10.1186/s12864-020-07333-z

Liu, K., Chen, B., & Liu, H. (2021). Evidence of partial thermal compensation in natural phytoplankton assemblages. Limnology and Oceanography Letters, lol2.10227. https://doi.org/10.1002/lol2.10227

Liu, K., Chen, B., Zheng, L., Su, S., Huang, B., Chen, M., & Liu, H. (2021). What controls microzooplankton biomass and herbivory rate across marginal seas of China? Limnology and Oceanography, 66(1), 61–75. https://doi.org/10.1002/lno.11588

Liu K, Ng HY, Zhang S, & Liu H. (2021). Effects of temperature on a mixotrophic dinoflagellate (Lepidodinium sp.) under different nutritional strategies. Marine Ecology Progress Series, 678, 37–49.

Liu, K., Suzuki, K., Chen, B., & Liu, H. (2021). Are temperature sensitivities of PROCHLOROCOCCUS and SYNECHOCOCCUS impacted by nutrient availability in the subtropical northwest Pacific? Limnology and Oceanography, 66(3), 639–651. https://doi.org/10.1002/lno.11629

Pang, M., Liu, K., & Liu, H. (2021). Evidence for mixotrophy in pico-chlorophytes: Study based on new Picochlorum (Trebouxiophyceae) strain1. J Phycol. PubMed. https://doi.org/10.1111/jpy.13218

Wu, W., Xu, Z., Dai, M., Gan, J., & Liu, H. (2021). Homogeneous selection shapes free‐living and particle‐associated bacterial communities in subtropical coastal waters. Diversity and Distributions, 27(10), 1904–1917. https://doi.org/10.1111/ddi.13193

Xia, X., Zheng, Q., Leung, S. K., Wang, Y., Lee, P. Y., Jing, H., Jiao, N., & Liu, H. (2021). Distinct metabolic strategies of the dominant heterotrophic bacterial groups associated with marine Synechococcus. Science of The Total Environment, 798, 149208. https://doi.org/10.1016/j.scitotenv.2021.149208

Xu, H., Shi, Z., Zhang, X., Pang, M., Pan, K., & Liu, H. (2021). Diatom frustules with different silica contents affect copepod grazing due to differences in the nanoscale mechanical properties. Limnology and Oceanography, 66(9), 3408–3420. https://doi.org/10.1002/lno.11887

Xu, Z., Li, Y., Li, M., & Liu, H. (2021). Transcriptomic response of Daphnia magna to nitrogen‐ or phosphorus‐limited diet. Ecology and Evolution, 11(16), 11009–11019. https://doi.org/10.1002/ece3.7889

Zhang, S., Xia, X., Ke, Y., Song, S., Shen, Z., Cheung, S., & Liu, H. (2021). Population dynamics and interactions of Noctiluca scintillans and Mesodinium rubrum during their successive blooms in a subtropical coastal water. Science of The Total Environment, 755, 142349. https://doi.org/10.1016/j.scitotenv.2020.142349

Zhong, Q., Xue, B., Noman, M. A., Wei, Y., Liu, H., Liu, H., Zheng, L., Jing, H., & Sun, J. (2021). Effect of river plume on phytoplankton community structure in Zhujiang River estuary. Journal of Oceanology and Limnology, 39(2), 550–565. https://doi.org/10.1007/s00343-020-9213-7

2020

Cheung, S., Nitanai, R., Tsurumoto, C., Endo, H., Nakaoka, S., Cheah, W., Lorda, J. F., Xia, X., Liu, H., & Suzuki, K. (2020). Physical Forcing Controls the Basin‐Scale Occurrence of Nitrogen‐Fixing Organisms in the North Pacific Ocean. Global Biogeochemical Cycles, 34(9). https://doi.org/10.1029/2019GB006452
Deng, L., Cheung, S., & Liu, H. (2020). Protistal Grazers Increase Grazing on Unicellular Cyanobacteria Diazotroph at Night. Frontiers in Marine Science, 7, 135. https://doi.org/10.3389/fmars.2020.00135

Li, Y., Jing, H., Kao, S.-J., Zhang, W., & Liu, H. (2020). Metabolic response of prokaryotic microbes to sporadic hypoxia in a eutrophic subtropical estuary. Marine Pollution Bulletin, 154, 111064. https://doi.org/10.1016/j.marpolbul.2020.111064

Lu, Y., Cheung, S., Chen, L., Kao, S.-J., Xia, X., Gan, J., Dai, M., & Liu, H. (2020). New insight to niche partitioning and ecological function of ammonia oxidizing archaea in subtropical estuarine ecosystem. Biogeosciences, 17(23), 6017–6032. https://doi.org/10.5194/bg-17-6017-2020

Rocke, E., Cheung, S., Gebe, Z., Dames, N. R., Liu, H., & Moloney, C. L. (2020). Marine Microbial Community Composition During the Upwelling Season in the Southern Benguela. Frontiers in Marine Science, 7, 255. https://doi.org/10.3389/fmars.2020.00255

Xia, X., Ki Leung, S., Cheung, S., Zhang, S., & Liu, H. (2020). Rare bacteria in seawater are dominant in the bacterial assemblage associated with the Bloom-forming dinoflagellate Noctiluca scintillans. Science of The Total Environment, 711, 135107. https://doi.org/10.1016/j.scitotenv.2019.135107

Xia, X., Lee, P., Cheung, S., Lu, Y., & Liu, H. (2020). Discovery of Euryhaline Phycoerythrobilin-Containing Synechococcus and Its Mechanisms for Adaptation to Estuarine Environments. MSystems, 5(6). https://doi.org/10.1128/mSystems.00842-20

Xu, Z., Li, Y., Lu, Y., Li, Y., Yuan, Z., Dai, M., & Liu, H. (2020). Impacts of the Zhe-Min Coastal Current on the biogeographic pattern of microbial eukaryotic communities. Progress in Oceanography, 183, 102309. https://doi.org/10.1016/j.pocean.2020.102309

Zhang, S., Li, C., Cheung, S., Sun, M., Song, S., Guo, W., Guo, C., Wu, G., & Liu, H. (2020). Snapshot of Peptidomics of the Red Tide Forming Species Noctiluca scintillans. Frontiers in Marine Science, 7, 569807. https://doi.org/10.3389/fmars.2020.569807

Zou, D., Liu, H., & Li, M. (2020). Community, Distribution, and Ecological Roles of Estuarine Archaea. Frontiers in Microbiology, 11, 2060. https://doi.org/10.3389/fmicb.2020.02060
Zou, D., Pan, J., Liu, Z., Zhang, C., Liu, H., & Li, M. (2020). The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity Gradient. Frontiers in Microbiology, 11, 285. https://doi.org/10.3389/fmicb.2020.00285

Zou, D., Wan, R., Han, L., Xu, M. N., Liu, Y., Liu, H., Kao, S.-J., & Li, M. (2020). Genomic Characteristics of a Novel Species of Ammonia-Oxidizing Archaea from the Jiulong River Estuary. Applied and Environmental Microbiology, 86(18). https://doi.org/10.1128/AEM.00736-20

2019

Cheung, S., Mak, W., Xia, X., Lu, Y., Cheung, Y., & Liu, H. (2019). Overlooked Genetic Diversity of Ammonia Oxidizing Archaea Lineages in the Global Oceans. Journal of Geophysical Research: Biogeosciences, 124(7), 1799–1811. https://doi.org/10.1029/2018JG004636

Cheung, S., Suzuki, K., Xia, X., & Liu, H. (2019). Transportation of Diazotroph Community From the Upstream to Downstream of the Kuroshio. Journal of Geophysical Research: Biogeosciences, 124(9), 2680–2693. https://doi.org/10.1029/2018JG004960

Li, Y., Yan, N., Wong, T. Y., Wang, W.-X., & Liu, H. (2019). Interaction of antibacterial silver nanoparticles and microbiota-dependent holobionts revealed by metatranscriptomic analysis. Environmental Science: Nano, 6(11), 3242–3255. https://doi.org/10.1039/C9EN00587K

Lu, Y., Xia, X., Cheung, S., Jing, H., & Liu, H. (2019). Differential Distribution and Determinants of Ammonia Oxidizing Archaea Sublineages in the Oxygen Minimum Zone off Costa Rica. Microorganisms, 7(10), 453. https://doi.org/10.3390/microorganisms7100453

Shi, Z., Liu, K., Zhang, S., Xu, H., & Liu, H. (2019). Spatial distributions of mesozooplankton biomass, community composition and grazing impact in association with hypoxia in the Pearl River Estuary. Estuarine, Coastal and Shelf Science, 225, 106237. https://doi.org/10.1016/j.ecss.2019.05.019

Tan, S., Cheung, S., Ho, T.-Y., & Liu, H. (2019). Metatranscriptomics of the bacterial community in response to atmospheric deposition in the Western North Pacific Ocean. Marine Genomics, 45, 57–63. https://doi.org/10.1016/j.margen.2019.01.008

Xia, X., Cheung, S., Endo, H., Suzuki, K., & Liu, H. (2019). Latitudinal and Vertical Variation of Synechococcus Assemblage Composition Along 170° W Transect From the South Pacific to the Arctic Ocean. Microbial Ecology, 77(2), 333–342. https://doi.org/10.1007/s00248-018-1308-8

Zhang, W., Ding, W., Li, Y.-X., Tam, C., Bougouffa, S., Wang, R., Pei, B., Chiang, H., Leung, P., Lu, Y., Sun, J., Fu, H., Bajic, V. B., Liu, H., Webster, N. S., & Qian, P.-Y. (2019). Marine biofilms constitute a bank of hidden microbial diversity and functional potential. Nature Communications, 10(1), 517. https://doi.org/10.1038/s41467-019-08463-z

Zou, D., Li, Y., Kao, S., Liu, H., & Li, M. (2019). Genomic adaptation to eutrophication of ammonia‐oxidizing archaea in the Pearl River estuary. Environmental Microbiology, 21(7), 2320–2332. https://doi.org/10.1111/1462-2920.14613